IL_8VVV_102
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVV_102 not in the Motif Atlas
- Geometric match to IL_8P9A_305
- Geometric discrepancy: 0.1133
- The information below is about IL_8P9A_305
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.1
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
8VVV|1|5|G|2853
8VVV|1|5|G|2854
8VVV|1|5|A|2855
8VVV|1|5|A|2856
8VVV|1|5|G|2857
8VVV|1|5|U|2858
8VVV|1|5|C|2859
8VVV|1|5|G|2860
8VVV|1|5|G|2861
*
8VVV|1|5|C|3843
8VVV|1|5|U|3844
8VVV|1|5|G|3845
8VVV|1|5|U|3846
8VVV|1|5|C|3847
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain V
- L23
Coloring options: