IL_8VVV_104

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8VVV|1|5|U|2886

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_104 not in the Motif Atlas

Geometric match to IL_8CRE_084

Geometric discrepancy: 0.098

The information below is about IL_8CRE_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8VVV|1|5|C|2873
8VVV|1|5|G|2874
8VVV|1|5|U|2875
8VVV|1|5|A|2876
8VVV|1|5|A|2877
8VVV|1|5|C|2878
*
8VVV|1|5|G|2883
8VVV|1|5|G|2884
8VVV|1|5|A|2885
8VVV|1|5|U|2886
8VVV|1|5|A|2887
8VVV|1|5|A|2888
8VVV|1|5|G|2889

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

eL41

Chain p

eL43