IL_8VVV_115
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- C(5MC)AA(A2M)UGCCUC(OMG)*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 8VVV|1|5|A2M|3791, 8VVV|1|5|C|3797, 8VVV|1|5|C|3816
- QA status
- Modified nucleotides: 5MC, A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVV_115 not in the Motif Atlas
- Geometric match to IL_8CRE_095
- Geometric discrepancy: 0.1532
- The information below is about IL_8CRE_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
8VVV|1|5|C|3787
8VVV|1|5|5MC|3788
8VVV|1|5|A|3789
8VVV|1|5|A|3790
8VVV|1|5|A2M|3791
8VVV|1|5|U|3792
8VVV|1|5|G|3793
8VVV|1|5|C|3794
8VVV|1|5|C|3795
8VVV|1|5|U|3796
8VVV|1|5|C|3797
8VVV|1|5|OMG|3798
*
8VVV|1|5|C|3814
8VVV|1|5|G|3815
8VVV|1|5|C|3816
8VVV|1|5|G|3817
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain n
- eL41
Coloring options: