IL_8VVV_116

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC(B8K)G*U(M7A)C

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8K, M7A

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_116 not in the Motif Atlas

Geometric match to IL_8CRE_096

Geometric discrepancy: 0.109

The information below is about IL_8CRE_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55516.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

8VVV|1|5|G|3901
8VVV|1|5|C|3902
8VVV|1|5|B8K|3903
8VVV|1|5|G|3904
*
8VVV|1|5|U|4569
8VVV|1|5|M7A|4570
8VVV|1|5|C|4571

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain O

uL13