IL_8VVV_121
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- G(5MU)GAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 8VVV|1|5|G|4090, 8VVV|1|5|G|4092, 8VVV|1|5|G|4093, 8VVV|1|5|C|4168, 8VVV|1|5|U|4169
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVV_121 not in the Motif Atlas
- Geometric match to IL_8CRE_106
- Geometric discrepancy: 0.1619
- The information below is about IL_8CRE_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_00555.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
8VVV|1|5|G|4088
8VVV|1|5|5MU|4089
8VVV|1|5|G|4090
8VVV|1|5|A|4091
8VVV|1|5|G|4092
8VVV|1|5|G|4093
8VVV|1|5|C|4094
*
8VVV|1|5|G|4167
8VVV|1|5|C|4168
8VVV|1|5|U|4169
8VVV|1|5|C|4170
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- uL2
- Chain G
- eL8
- Chain X
- uL23
Coloring options: