IL_8VVV_130

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

8VVV|1|5|U|4443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_130 not in the Motif Atlas

Geometric match to IL_8CRE_113

Geometric discrepancy: 0.2116

The information below is about IL_8CRE_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8VVV|1|5|G|4411
8VVV|1|5|U|4412
8VVV|1|5|G|4413
*
8VVV|1|5|U|4441
8VVV|1|5|U|4442
8VVV|1|5|U|4443
8VVV|1|5|U|4444
8VVV|1|5|U|4445

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain I

L10