IL_8VVV_131

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCA(1MA)G*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_131 not in the Motif Atlas

Geometric match to IL_8CRE_114

Geometric discrepancy: 0.1156

The information below is about IL_8CRE_114

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8VVV|1|5|C|4418
8VVV|1|5|C|4419
8VVV|1|5|A|4420
8VVV|1|5|1MA|4421
8VVV|1|5|G|4422
*
8VVV|1|5|C|4432
8VVV|1|5|G|4433
8VVV|1|5|A|4434
8VVV|1|5|C|4435
8VVV|1|5|G|4436

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

L10

Chain m

eL40