IL_8VVV_137

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

8VVV|1|5|A|4494

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_137 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.381

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8VVV|1|5|U|4474
8VVV|1|5|U|4475
8VVV|1|5|G|4476
*
8VVV|1|5|C|4491
8VVV|1|5|C|4492
8VVV|1|5|A|4493
8VVV|1|5|A|4494
8VVV|1|5|G|4495

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40