IL_8VVV_141

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

8VVV|1|5|C|4726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_141 not in the Motif Atlas

Geometric match to IL_8P9A_342

Geometric discrepancy: 0.2352

The information below is about IL_8P9A_342

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8VVV|1|5|C|4588
8VVV|1|5|C|4589
8VVV|1|5|A|4590
8VVV|1|5|U|4591
*
8VVV|1|5|A|4723
8VVV|1|5|G|4724
8VVV|1|5|G|4725
8VVV|1|5|C|4726
8VVV|1|5|G|4727

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain O

uL13