IL_8VVV_143
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- C(UR3)CAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVV_143 not in the Motif Atlas
- Geometric match to IL_8CRE_125
- Geometric discrepancy: 0.1106
- The information below is about IL_8CRE_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8VVV|1|5|C|4602
8VVV|1|5|UR3|4603
8VVV|1|5|C|4604
8VVV|1|5|A|4605
8VVV|1|5|G|4606
8VVV|1|5|U|4607
8VVV|1|5|A|4608
8VVV|1|5|C|4609
*
8VVV|1|5|G|4614
8VVV|1|5|G|4615
8VVV|1|5|A|4616
8VVV|1|5|A|4617
8VVV|1|5|C|4618
8VVV|1|5|C|4619
8VVV|1|5|G|4620
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain H
- uL6
- Chain V
- L23
- Chain m
- eL40
- Chain v
- eukaryotic elongation factor 2
Coloring options: