IL_8VVV_150

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUCGGAUAGC*GU(OMG)C(2MG)GAGAG

Length

21 nucleotides

Bulged bases

8VVV|1|5|C|4763, 8VVV|1|5|U|4764, 8VVV|1|5|A|4770, 8VVV|1|5|OMG|4876, 8VVV|1|5|C|4877, 8VVV|1|5|G|4879, 8VVV|1|5|A|4882

QA status

Modified nucleotides: OMG, 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVV|1|5|C|4762
8VVV|1|5|C|4763
8VVV|1|5|U|4764
8VVV|1|5|C|4765
8VVV|1|5|G|4766
8VVV|1|5|G|4767
8VVV|1|5|A|4768
8VVV|1|5|U|4769
8VVV|1|5|A|4770
8VVV|1|5|G|4771
8VVV|1|5|C|4772
*
8VVV|1|5|G|4874
8VVV|1|5|U|4875
8VVV|1|5|OMG|4876
8VVV|1|5|C|4877
8VVV|1|5|2MG|4878
8VVV|1|5|G|4879
8VVV|1|5|A|4880
8VVV|1|5|G|4881
8VVV|1|5|A|4882
8VVV|1|5|G|4883

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

L6

Chain H

uL6

Chain M

eL14

Chain O

uL13

Chain S

eL20