IL_8VVV_161

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_161 not in the Motif Atlas

Geometric match to IL_8CRE_141

Geometric discrepancy: 0.1926

The information below is about IL_8CRE_141

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8VVV|1|5|A|5020
8VVV|1|5|G|5021
8VVV|1|5|A|5022
8VVV|1|5|G|5023
*
8VVV|1|5|C|5038
8VVV|1|5|G|5039
8VVV|1|5|A|5040
8VVV|1|5|U|5041

Current chains

Chain 5

28S rRNA

Nearby chains

Chain II

eS8

Chain R

eL19