IL_8VVV_178

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCCUUU*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_178 not in the Motif Atlas

Geometric match to IL_8CRE_399

Geometric discrepancy: 0.1618

The information below is about IL_8CRE_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31545.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8VVV|1|9|U|116
8VVV|1|9|C|117
8VVV|1|9|C|118
8VVV|1|9|U|119
8VVV|1|9|U|120
8VVV|1|9|U|121
*
8VVV|1|9|A|343
8VVV|1|9|U|344
8VVV|1|9|U|345
8VVV|1|9|C|346
8VVV|1|9|G|347

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain II

eS8