IL_8VVV_182

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_182 not in the Motif Atlas

Geometric match to IL_8CRE_392

Geometric discrepancy: 0.328

The information below is about IL_8CRE_392

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12697.1

Basepair signature

cWW-cWW-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8VVV|1|9|C|188
8VVV|1|9|U|189
8VVV|1|9|G|190
8VVV|1|9|A|191
8VVV|1|9|C|192
*
8VVV|1|9|G|207
8VVV|1|9|G|208
8VVV|1|9|A|209
8VVV|1|9|U|210
8VVV|1|9|G|211

Current chains

Chain 9

18S rRNA

Nearby chains

Chain II

eS8