IL_8VVV_188
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- 8VVV|1|9|U|368, 8VVV|1|9|C|369
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVV_188 not in the Motif Atlas
- Geometric match to IL_8P9A_392
- Geometric discrepancy: 0.1666
- The information below is about IL_8P9A_392
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_01372.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
8VVV|1|9|U|366
8VVV|1|9|U|367
8VVV|1|9|U|368
8VVV|1|9|C|369
8VVV|1|9|G|370
8VVV|1|9|A|371
*
8VVV|1|9|U|393
8VVV|1|9|G|394
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain II
- eS8
- Chain LL
- uS17
- Chain R
- eL19
Coloring options: