IL_8VVV_200

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8VVV|1|9|U|607

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_200 not in the Motif Atlas

Geometric match to IL_5J7L_017

Geometric discrepancy: 0.3059

The information below is about IL_5J7L_017

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8VVV|1|9|G|606
8VVV|1|9|U|607
8VVV|1|9|C|608
*
8VVV|1|9|G|635
8VVV|1|9|C|636

Current chains

Chain 9

18S rRNA

Nearby chains

Chain DD

uS3

Chain JJ

uS4

Chain ee

eS30