IL_8VVV_203

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8VVV|1|9|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_203 not in the Motif Atlas

Geometric match to IL_8P9A_405

Geometric discrepancy: 0.189

The information below is about IL_8P9A_405

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8VVV|1|9|G|665
8VVV|1|9|U|666
8VVV|1|9|U|667
8VVV|1|9|A|668
8VVV|1|9|A|669
8VVV|1|9|A|670
8VVV|1|9|A|671
*
8VVV|1|9|U|1161
8VVV|1|9|C|1162

Current chains

Chain 9

18S rRNA

Nearby chains

Chain XX

uS12

Chain aa

eS26