IL_8VVV_226

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

8VVV|1|9|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_226 not in the Motif Atlas

Geometric match to IL_5J7L_039

Geometric discrepancy: 0.1106

The information below is about IL_5J7L_039

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8VVV|1|9|G|1203
8VVV|1|9|A|1204
*
8VVV|1|9|U|1694
8VVV|1|9|A|1695
8VVV|1|9|C|1696

Current chains

Chain 9

18S rRNA

Nearby chains

Chain CC

eS1

Chain aa

eS26

Chain w

Serpine mRNA binding protein 1