IL_8VVV_236

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8VVV|1|9|U|1326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_236 not in the Motif Atlas

Geometric match to IL_8CRE_451

Geometric discrepancy: 0.1409

The information below is about IL_8CRE_451

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8VVV|1|9|G|1325
8VVV|1|9|U|1326
8VVV|1|9|G|1327
*
8VVV|1|9|C|1502
8VVV|1|9|C|1503

Current chains

Chain 9

18S rRNA

Nearby chains

Chain KK

eS10

Chain dd

uS14

Chain v

eukaryotic elongation factor 2