IL_8VVV_239
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 8VVV|1|9|U|1494, 8VVV|1|9|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVV_239 not in the Motif Atlas
- Geometric match to IL_8P9A_440
- Geometric discrepancy: 0.1936
- The information below is about IL_8P9A_440
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34117.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
8VVV|1|9|U|1333
8VVV|1|9|G|1334
8VVV|1|9|G|1335
*
8VVV|1|9|U|1492
8VVV|1|9|C|1493
8VVV|1|9|U|1494
8VVV|1|9|G|1495
8VVV|1|9|U|1496
8VVV|1|9|G|1497
8VVV|1|9|A|1498
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain DD
- uS3
- Chain KK
- eS10
- Chain UU
- uS10
- Chain dd
- uS14
- Chain w
- Serpine mRNA binding protein 1
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