IL_8VVV_240

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

(4AC)G*CAG

Length

5 nucleotides

Bulged bases

8VVV|1|9|A|1489

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_240 not in the Motif Atlas

Geometric match to IL_8CRE_455

Geometric discrepancy: 0.1425

The information below is about IL_8CRE_455

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8VVV|1|9|4AC|1337
8VVV|1|9|G|1338
*
8VVV|1|9|C|1488
8VVV|1|9|A|1489
8VVV|1|9|G|1490

Current chains

Chain 9

18S rRNA

Nearby chains

Chain CC

eS1

Chain DD

uS3

Chain QQ

uS9

Chain UU

uS10

Chain dd

uS14

Chain w

Serpine mRNA binding protein 1