IL_8VVV_248

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

8VVV|1|9|C|1553, 8VVV|1|9|A|1580, 8VVV|1|9|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVV|1|9|G|1550
8VVV|1|9|U|1551
8VVV|1|9|G|1552
8VVV|1|9|C|1553
8VVV|1|9|C|1554
8VVV|1|9|U|1555
8VVV|1|9|A|1556
8VVV|1|9|C|1557
8VVV|1|9|C|1558
*
8VVV|1|9|G|1577
8VVV|1|9|U|1578
8VVV|1|9|A|1579
8VVV|1|9|A|1580
8VVV|1|9|C|1581
8VVV|1|9|C|1582

Current chains

Chain 9

18S rRNA

Nearby chains

Chain DD

uS3

Chain KK

eS10

Chain UU

uS10

Chain dd

uS14