IL_8VVV_257

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

8VVV|1|9|U|1721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_257 not in the Motif Atlas

Geometric match to IL_8CRE_472

Geometric discrepancy: 0.1022

The information below is about IL_8CRE_472

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8VVV|1|9|U|1720
8VVV|1|9|U|1721
8VVV|1|9|G|1722
*
8VVV|1|9|U|1812
8VVV|1|9|A|1813

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain V

L23

Chain XX

uS12

Chain n

eL41