IL_8VVV_261

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_261 not in the Motif Atlas

Geometric match to IL_9DFE_075

Geometric discrepancy: 0.1735

The information below is about IL_9DFE_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8VVV|1|9|C|1742
8VVV|1|9|G|1743
8VVV|1|9|G|1744
8VVV|1|9|A|1745
8VVV|1|9|U|1746
*
8VVV|1|9|A|1788
8VVV|1|9|G|1789
8VVV|1|9|A|1790
8VVV|1|9|A|1791
8VVV|1|9|G|1792

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

eS6

Chain II

eS8

Chain W

uL24