IL_8VWQ_124

3D structure

PDB id

8VWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8VWQ|1|2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VWQ_124 not in the Motif Atlas

Geometric match to IL_5J7L_012

Geometric discrepancy: 0.128

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8VWQ|1|2|G|147
8VWQ|1|2|G|148
8VWQ|1|2|A|149
8VWQ|1|2|U|150
8VWQ|1|2|A|151
8VWQ|1|2|A|152
8VWQ|1|2|C|153
*
8VWQ|1|2|G|168
8VWQ|1|2|C|169
8VWQ|1|2|U|170
8VWQ|1|2|A|171
8VWQ|1|2|A|172
8VWQ|1|2|U|173
8VWQ|1|2|A|174
8VWQ|1|2|C|175

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20