IL_8VWQ_126

3D structure

PDB id

8VWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

8VWQ|1|2|U|244, 8VWQ|1|2|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VWQ_126 not in the Motif Atlas

Geometric match to IL_5J7L_014

Geometric discrepancy: 0.0854

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

8VWQ|1|2|G|242
8VWQ|1|2|A|243
8VWQ|1|2|U|244
8VWQ|1|2|U|245
8VWQ|1|2|A|246
8VWQ|1|2|G|247
*
8VWQ|1|2|C|277
8VWQ|1|2|G|278
8VWQ|1|2|A|279
8VWQ|1|2|C|280
8VWQ|1|2|G|281
8VWQ|1|2|A|282
8VWQ|1|2|U|283
8VWQ|1|2|C|284

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

Small ribosomal subunit protein uS12

Chain v

Small ribosomal subunit protein uS17