IL_8VWQ_135

3D structure

PDB id

8VWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VWQ_135 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.1289

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

8VWQ|1|2|G|450
8VWQ|1|2|A|451
8VWQ|1|2|A|452
8VWQ|1|2|G|453
8VWQ|1|2|G|454
8VWQ|1|2|G|455
*
8VWQ|1|2|C|477
8VWQ|1|2|A|478
8VWQ|1|2|U|479
8VWQ|1|2|U|480
8VWQ|1|2|G|481
8VWQ|1|2|A|482
8VWQ|1|2|C|483

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16