IL_8VWQ_137

3D structure

PDB id

8VWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

8VWQ|1|2|A|532, 8VWQ|1|2|U|534, 8VWQ|1|2|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VWQ_137 not in the Motif Atlas

Geometric match to IL_8P9A_404

Geometric discrepancy: 0.1353

The information below is about IL_8P9A_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8VWQ|1|2|G|515
8VWQ|1|2|PSU|516
8VWQ|1|2|G|517
8VWQ|1|2|C|518
8VWQ|1|2|C|519
8VWQ|1|2|A|520
8VWQ|1|2|G|521
*
8VWQ|1|2|C|528
8VWQ|1|2|G|529
8VWQ|1|2|G|530
8VWQ|1|2|U|531
8VWQ|1|2|A|532
8VWQ|1|2|A|533
8VWQ|1|2|U|534
8VWQ|1|2|A|535
8VWQ|1|2|C|536

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S3

Chain i

30S ribosomal protein S4

Chain q

Small ribosomal subunit protein uS12