IL_8VWQ_145

3D structure

PDB id

8VWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

8VWQ|1|2|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VWQ_145 not in the Motif Atlas

Geometric match to IL_5J7L_033

Geometric discrepancy: 0.0598

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8VWQ|1|2|U|662
8VWQ|1|2|A|663
8VWQ|1|2|G|664
8VWQ|1|2|A|665
8VWQ|1|2|G|666
*
8VWQ|1|2|U|740
8VWQ|1|2|G|741
8VWQ|1|2|G|742
8VWQ|1|2|A|743

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain k

30S ribosomal protein S6

Chain t

Small ribosomal subunit protein uS15

Chain w

30S ribosomal protein S18