IL_8VWQ_150

3D structure

PDB id

8VWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VWQ_150 not in the Motif Atlas

Geometric match to IL_5J7L_038

Geometric discrepancy: 0.0863

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

8VWQ|1|2|G|887
8VWQ|1|2|G|888
8VWQ|1|2|A|889
8VWQ|1|2|G|890
8VWQ|1|2|U|891
8VWQ|1|2|A|892
8VWQ|1|2|C|893
8VWQ|1|2|G|894
*
8VWQ|1|2|U|905
8VWQ|1|2|A|906
8VWQ|1|2|A|907
8VWQ|1|2|A|908
8VWQ|1|2|A|909
8VWQ|1|2|C|910

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

Small ribosomal subunit protein uS12