IL_8W2N_071

3D structure

PDB id

8W2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the open conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8W2N_071 not in the Motif Atlas

Geometric match to IL_5J7L_387

Geometric discrepancy: 0.0894

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8W2N|1|1|U|1851
8W2N|1|1|U|1852
8W2N|1|1|A|1853
8W2N|1|1|A|1854
8W2N|1|1|U|1855
8W2N|1|1|U|1856
8W2N|1|1|G|1857
8W2N|1|1|A|1858
8W2N|1|1|U|1859
8W2N|1|1|G|1860
*
8W2N|1|1|U|1882
8W2N|1|1|U|1883
8W2N|1|1|G|1884
8W2N|1|1|A|1885
8W2N|1|1|U|1886
8W2N|1|1|C|1887
8W2N|1|1|G|1888
8W2N|1|1|A|1889
8W2N|1|1|A|1890
8W2N|1|1|G|1891

Current chains

Chain 1

23S ribosomal RNA

Nearby chains