IL_8W2N_117

3D structure

PDB id

8W2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the open conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8W2N|1|2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8W2N_117 not in the Motif Atlas

Geometric match to IL_5J7L_012

Geometric discrepancy: 0.1331

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8W2N|1|2|G|147
8W2N|1|2|G|148
8W2N|1|2|A|149
8W2N|1|2|U|150
8W2N|1|2|A|151
8W2N|1|2|A|152
8W2N|1|2|C|153
*
8W2N|1|2|G|168
8W2N|1|2|C|169
8W2N|1|2|U|170
8W2N|1|2|A|171
8W2N|1|2|A|172
8W2N|1|2|U|173
8W2N|1|2|A|174
8W2N|1|2|C|175

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20