IL_8W2N_119

3D structure

PDB id

8W2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the open conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

8W2N|1|2|U|244, 8W2N|1|2|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8W2N_119 not in the Motif Atlas

Geometric match to IL_5J7L_014

Geometric discrepancy: 0.1003

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

8W2N|1|2|G|242
8W2N|1|2|A|243
8W2N|1|2|U|244
8W2N|1|2|U|245
8W2N|1|2|A|246
8W2N|1|2|G|247
*
8W2N|1|2|C|277
8W2N|1|2|G|278
8W2N|1|2|A|279
8W2N|1|2|C|280
8W2N|1|2|G|281
8W2N|1|2|A|282
8W2N|1|2|U|283
8W2N|1|2|C|284

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12

Chain v

30S ribosomal protein S17