IL_8W2N_130

3D structure

PDB id

8W2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the open conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

8W2N|1|2|A|532, 8W2N|1|2|U|534, 8W2N|1|2|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8W2N_130 not in the Motif Atlas

Geometric match to IL_8P9A_404

Geometric discrepancy: 0.1462

The information below is about IL_8P9A_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8W2N|1|2|G|515
8W2N|1|2|PSU|516
8W2N|1|2|G|517
8W2N|1|2|C|518
8W2N|1|2|C|519
8W2N|1|2|A|520
8W2N|1|2|G|521
*
8W2N|1|2|C|528
8W2N|1|2|G|529
8W2N|1|2|G|530
8W2N|1|2|U|531
8W2N|1|2|A|532
8W2N|1|2|A|533
8W2N|1|2|U|534
8W2N|1|2|A|535
8W2N|1|2|C|536

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S3

Chain i

30S ribosomal protein S4

Chain q

30S ribosomal protein S12