IL_8W2N_153

3D structure

PDB id

8W2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the open conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

8W2N|1|2|C|1200, 8W2N|1|2|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8W2N_153 not in the Motif Atlas

Geometric match to IL_5J7L_048

Geometric discrepancy: 0.0898

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

8W2N|1|2|G|1057
8W2N|1|2|G|1058
*
8W2N|1|2|U|1199
8W2N|1|2|C|1200
8W2N|1|2|A|1201
8W2N|1|2|U|1202
8W2N|1|2|C|1203

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S3

Chain o

30S ribosomal protein S10

Chain s

30S ribosomal protein S14