IL_8W2N_176
3D structure
- PDB id
- 8W2N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the open conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8W2N_176 not in the Motif Atlas
- Homologous match to IL_8B0X_175
- Geometric discrepancy: 0.4426
- The information below is about IL_8B0X_175
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_71138.1
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
8W2N|1|3|C|71
8W2N|1|3|G|72
8W2N|1|3|A|73
8W2N|1|3|U|74
8W2N|1|3|G|75
8W2N|1|3|G|76
8W2N|1|3|U|77
8W2N|1|3|A|78
8W2N|1|3|G|79
*
8W2N|1|3|C|97
8W2N|1|3|G|98
8W2N|1|3|A|99
8W2N|1|3|G|100
8W2N|1|3|A|101
8W2N|1|3|G|102
8W2N|1|3|U|103
8W2N|1|3|A|104
8W2N|1|3|G|105
Current chains
- Chain 3
- 5S mRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L25
Coloring options: