IL_8W51_017

3D structure

PDB id

8W51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF(H114A) on E.coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8W51|1|A|G|801, 8W51|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8W51_017 not in the Motif Atlas

Homologous match to IL_8VTW_017

Geometric discrepancy: 0.0732

The information below is about IL_8VTW_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17470.7

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8W51|1|A|G|674
8W51|1|A|A|675
8W51|1|A|A|676
8W51|1|A|A|677
8W51|1|A|C|678
*
8W51|1|A|G|799
8W51|1|A|A|800
8W51|1|A|G|801
8W51|1|A|A|802
8W51|1|A|U|803
8W51|1|A|A|804
8W51|1|A|G|805
8W51|1|A|C|806

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15