IL_8W51_035
3D structure
- PDB id
- 8W51 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of YchF(H114A) on E.coli 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UCCCAAAG*CA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8W51_035 not in the Motif Atlas
- Geometric match to IL_5J7L_278
- Geometric discrepancy: 0.0589
- The information below is about IL_5J7L_278
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
8W51|1|A|U|1004
8W51|1|A|C|1005
8W51|1|A|C|1006
8W51|1|A|C|1007
8W51|1|A|A|1008
8W51|1|A|A|1009
8W51|1|A|A|1010
8W51|1|A|G|1011
*
8W51|1|A|C|1150
8W51|1|A|A|1151
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain K
- 50S ribosomal protein L13
- Chain R
- 50S ribosomal protein L20
Coloring options: