IL_8W51_040
3D structure
- PDB id
- 8W51 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of YchF(H114A) on E.coli 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GAAG*CGGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8W51_040 not in the Motif Atlas
- Homologous match to IL_5J7L_283
- Geometric discrepancy: 0.1077
- The information below is about IL_5J7L_283
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8W51|1|A|G|1038
8W51|1|A|A|1039
8W51|1|A|A|1040
8W51|1|A|G|1041
*
8W51|1|A|C|1114
8W51|1|A|G|1115
8W51|1|A|G|1116
8W51|1|A|C|1117
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 5
- 50S ribosomal protein L36
- Chain G
- 50S ribosomal protein L6
- Chain N
- 50S ribosomal protein L16
- Chain W
- 50S ribosomal protein L25
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