IL_8W51_053

3D structure

PDB id

8W51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF(H114A) on E.coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

8W51|1|A|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8W51_053 not in the Motif Atlas

Homologous match to IL_8VTW_054

Geometric discrepancy: 0.0971

The information below is about IL_8VTW_054

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

8W51|1|A|C|1417
8W51|1|A|G|1418
8W51|1|A|A|1419
8W51|1|A|A|1420
8W51|1|A|G|1421
*
8W51|1|A|C|1577
8W51|1|A|U|1578
8W51|1|A|A|1579
8W51|1|A|A|1580
8W51|1|A|G|1581

Current chains

Chain A

23S rRNA

Nearby chains