IL_8W51_089

3D structure

PDB id

8W51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF(H114A) on E.coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8W51|1|A|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8W51_089 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.4064

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

8W51|1|A|C|2129
8W51|1|A|U|2130
8W51|1|A|U|2131
8W51|1|A|U|2132
8W51|1|A|G|2133
8W51|1|A|A|2134
8W51|1|A|A|2135
8W51|1|A|G|2136
*
8W51|1|A|U|2155
8W51|1|A|G|2156
8W51|1|A|G|2157
8W51|1|A|A|2158
8W51|1|A|G|2159

Current chains

Chain A

23S rRNA

Nearby chains