IL_8W51_122

3D structure

PDB id

8W51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF(H114A) on E.coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8W51_122 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0738

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8W51|1|A|U|1851
8W51|1|A|U|1852
8W51|1|A|A|1853
8W51|1|A|A|1854
8W51|1|A|U|1855
8W51|1|A|U|1856
8W51|1|A|G|1857
8W51|1|A|A|1858
8W51|1|A|U|1859
8W51|1|A|G|1860
*
8W51|1|A|U|1882
8W51|1|A|U|1883
8W51|1|A|G|1884
8W51|1|A|A|1885
8W51|1|A|U|1886
8W51|1|A|C|1887
8W51|1|A|G|1888
8W51|1|A|A|1889
8W51|1|A|A|1890
8W51|1|A|G|1891

Current chains

Chain A

23S rRNA

Nearby chains