IL_8WHX_052

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCCAG*CGC

Length

8 nucleotides

Bulged bases

8WHX|1|A|G|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHX_052 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.2497

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

8WHX|1|A|G|1434
8WHX|1|A|C|1435
8WHX|1|A|C|1436
8WHX|1|A|A|1437
8WHX|1|A|G|1438
*
8WHX|1|A|C|1446
8WHX|1|A|G|1447
8WHX|1|A|C|1448

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L22

Chain W

50S ribosomal protein L23