IL_8WHX_072

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAUGG*UGAG

Length

9 nucleotides

Bulged bases

8WHX|1|A|U|1932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHX_072 not in the Motif Atlas

Geometric match to IL_5J7L_296

Geometric discrepancy: 0.2465

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8WHX|1|A|C|1930
8WHX|1|A|A|1931
8WHX|1|A|U|1932
8WHX|1|A|G|1933
8WHX|1|A|G|1934
*
8WHX|1|A|U|1960
8WHX|1|A|G|1961
8WHX|1|A|A|1962
8WHX|1|A|G|1963

Current chains

Chain A

23S rRNA

Nearby chains