IL_8WHX_080

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUAAG*UUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHX_080 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.1613

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

8WHX|1|A|U|2068
8WHX|1|A|U|2069
8WHX|1|A|A|2070
8WHX|1|A|A|2071
8WHX|1|A|G|2072
*
8WHX|1|A|U|2111
8WHX|1|A|U|2112
8WHX|1|A|A|2113
8WHX|1|A|A|2114
8WHX|1|A|G|2115

Current chains

Chain A

23S rRNA

Nearby chains