IL_8WHX_094

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUGUAGGAUAG*UC

Length

13 nucleotides

Bulged bases

8WHX|1|A|U|2334, 8WHX|1|A|U|2341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHX_094 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.5749

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

8WHX|1|A|G|2333
8WHX|1|A|U|2334
8WHX|1|A|G|2335
8WHX|1|A|U|2336
8WHX|1|A|A|2337
8WHX|1|A|G|2338
8WHX|1|A|G|2339
8WHX|1|A|A|2340
8WHX|1|A|U|2341
8WHX|1|A|A|2342
8WHX|1|A|G|2343
*
8WHX|1|A|U|2401
8WHX|1|A|C|2402

Current chains

Chain A

23S rRNA

Nearby chains