IL_8WHX_112

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

8WHX|1|A|A|2766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHX_112 not in the Motif Atlas

Homologous match to IL_5J7L_342

Geometric discrepancy: 0.0794

The information below is about IL_5J7L_342

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

8WHX|1|A|U|2746
8WHX|1|A|G|2747
*
8WHX|1|A|C|2764
8WHX|1|A|A|2765
8WHX|1|A|A|2766
8WHX|1|A|G|2767

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L13