IL_8WHX_116

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHX_116 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.2869

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8WHX|1|A|C|2876
8WHX|1|A|U|2877
8WHX|1|A|A|2878
8WHX|1|A|G|2879
8WHX|1|A|U|2880
8WHX|1|A|A|2881
8WHX|1|A|C|2882
*
8WHX|1|A|G|2887
8WHX|1|A|G|2888
8WHX|1|A|A|2889
8WHX|1|A|C|2890
8WHX|1|A|C|2891
8WHX|1|A|G|2892

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L6