IL_8WHX_140
3D structure
- PDB id
- 8WHX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAUAAG*UCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 8WHX|1|a|U|170
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WHX_140 not in the Motif Atlas
- Homologous match to IL_5J7L_012
- Geometric discrepancy: 0.1057
- The information below is about IL_5J7L_012
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.6
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8WHX|1|a|G|144
8WHX|1|a|G|145
8WHX|1|a|A|146
8WHX|1|a|U|147
8WHX|1|a|A|148
8WHX|1|a|A|149
8WHX|1|a|G|150
*
8WHX|1|a|U|165
8WHX|1|a|C|166
8WHX|1|a|U|167
8WHX|1|a|A|168
8WHX|1|a|A|169
8WHX|1|a|U|170
8WHX|1|a|A|171
8WHX|1|a|C|172
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain u
- 30S ribosomal protein S20
Coloring options: