IL_8WHX_154
3D structure
- PDB id
- 8WHX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGUAAAG*CG
- Length
- 9 nucleotides
- Bulged bases
- 8WHX|1|a|A|552
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WHX_154 not in the Motif Atlas
- Homologous match to IL_4LFB_022
- Geometric discrepancy: 0.076
- The information below is about IL_4LFB_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20847.1
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 5
Unit IDs
8WHX|1|a|C|549
8WHX|1|a|G|550
8WHX|1|a|U|551
8WHX|1|a|A|552
8WHX|1|a|A|553
8WHX|1|a|A|554
8WHX|1|a|G|555
*
8WHX|1|a|C|862
8WHX|1|a|G|863
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain f
- 30S ribosomal protein S5
- Chain m
- 30S ribosomal protein S12
- Chain r
- 30S ribosomal protein S17
- Chain v
- 30S ribosomal protein S22
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